Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_07805 | Not Available | Positive | 1858272 - 1858868 | 22843.5 |
| tetratricopeptide repeat protein | DXC44_07810 | Not Available | Positive | 1859016 - 1860476 | 57717.5 |
| hypothetical protein | DXC44_07815 | Not Available | Negative | 1860668 - 1862263 | 62507.7 |
| alpha-amylase | DXC44_07820 | Not Available | Positive | 1862512 - 1864362 | 70861.0 |
| glycoside hydrolase family 97 protein | DXC44_07825 | Not Available | Positive | 1864404 - 1866620 | 84390.2 |
| hypothetical protein | DXC44_07830 | Not Available | Positive | 1866673 - 1866852 | 7024.59 |
| tonb-dependent receptor | DXC44_07835 | Not Available | Positive | 1867020 - 1870049 | 111526.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_07840 | Not Available | Positive | 1870062 - 1871756 | 63594.8 |
| susf/suse family outer membrane protein | DXC44_07845 | Not Available | Positive | 1871785 - 1872921 | 41598.3 |
| duf5115 domain-containing protein | DXC44_07850 | Not Available | Positive | 1872966 - 1874360 | 50653.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

