Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gatb/yqey domain-containing protein | DXC44_07745 | Not Available | Positive | 1843974 - 1844423 | 15932.5 |
| dna repair protein reco | DXC44_07750 | Not Available | Negative | 1844964 - 1845689 | 28652.8 |
| Trna-glu | Not Available | Not Available | Positive | 1845933 - 1846007 | Not Available |
| 30s ribosomal protein s20 | DXC44_07760 | Not Available | Positive | 1846047 - 1846301 | 9698.07 |
| dna topoisomerase (atp-hydrolyzing) subunit b | DXC44_07765 | Not Available | Positive | 1846748 - 1848712 | 72969.4 |
| 4-alpha-glucanotransferase | DXC44_07770 | Not Available | Positive | 1849040 - 1851718 | 104530.0 |
| mfs transporter | DXC44_07775 | Not Available | Positive | 1851792 - 1853147 | 49058.2 |
| arac family transcriptional regulator | DXC44_07780 | Not Available | Positive | 1853853 - 1854338 | 19011.1 |
| hypothetical protein | DXC44_07785 | Not Available | Positive | 1854411 - 1856852 | 89062.1 |
| atp-binding protein | DXC44_07800 | Not Available | Positive | 1857760 - 1858068 | 11968.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

