Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xaa-pro aminopeptidase | DXC44_07590 | Not Available | Negative | 1812507 - 1812737 | 8754.29 |
| rna polymerase sigma-54 factor | DXC44_07595 | Not Available | Positive | 1812866 - 1814335 | 56116.2 |
| pap2 family protein | DXC44_07600 | Not Available | Positive | 1814346 - 1815002 | 24797.8 |
| glycine cleavage system protein h | DXC44_07605 | Not Available | Positive | 1815039 - 1815419 | 14151.4 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | DXC44_07610 | Not Available | Positive | 1815544 - 1816053 | 17775.1 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) | DXC44_07615 | Not Available | Positive | 1816137 - 1817981 | 68220.7 |
| glutaminase | DXC44_07620 | Not Available | Positive | 1817995 - 1818909 | 34090.9 |
| rna-binding protein | DXC44_07625 | Not Available | Negative | 1819224 - 1819595 | 13160.2 |
| hypothetical protein | DXC44_07630 | Not Available | Positive | 1819716 - 1819925 | 8019.02 |
| peptidase m23 | DXC44_07640 | Not Available | Negative | 1820097 - 1821431 | 50696.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

