Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna primase | DXC44_07485 | Not Available | Positive | 1789780 - 1790736 | 36435.2 |
| mobilization protein | DXC44_07490 | Not Available | Positive | 1790947 - 1792350 | 54411.3 |
| hypothetical protein | DXC44_07495 | Not Available | Positive | 1792669 - 1793388 | 27412.6 |
| hypothetical protein | DXC44_07500 | Not Available | Positive | 1793444 - 1793887 | 17262.8 |
| topoisomerase i | DXC44_07505 | Not Available | Positive | 1793897 - 1794637 | 28642.9 |
| Trna-leu | Not Available | Not Available | Positive | 1795678 - 1795764 | Not Available |
| mannose-1-phosphate guanylyltransferase | DXC44_07520 | Not Available | Positive | 1795949 - 1796992 | 39478.3 |
| hit family protein | DXC44_07525 | Not Available | Negative | 1797081 - 1797488 | 15026.2 |
| transcription elongation factor grea | DXC44_07530 | Not Available | Negative | 1797540 - 1798004 | 16780.4 |
| duf4369 domain-containing protein | DXC44_07535 | Not Available | Negative | 1798205 - 1799353 | 42886.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

