Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXC44_00580 | Not Available | Negative | 188659 - 191550 | 106997.0 |
| hypothetical protein | DXC44_00585 | Not Available | Negative | 191589 - 191831 | 8045.17 |
| site-specific integrase | DXC44_00590 | Not Available | Positive | 192199 - 193359 | 44984.8 |
| rna polymerase sigma-70 factor | DXC44_00600 | Not Available | Positive | 194548 - 195063 | 20230.9 |
| duf4974 domain-containing protein | DXC44_00605 | Not Available | Positive | 195135 - 195938 | 30787.4 |
| tonb-dependent receptor | DXC44_00610 | Not Available | Positive | 195935 - 198502 | 97759.8 |
| duf4249 domain-containing protein | DXC44_00615 | Not Available | Positive | 198507 - 199478 | 36375.9 |
| hypothetical protein | DXC44_00620 | Not Available | Positive | 199499 - 200128 | 23356.1 |
| duf4848 domain-containing protein | DXC44_00625 | Not Available | Positive | 200154 - 200996 | 31824.9 |
| hypothetical protein | DXC44_00630 | Not Available | Positive | 201086 - 201853 | 28423.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

