Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylmalonyl-coa carboxyltransferase | DXC44_07380 | Not Available | Negative | 1771255 - 1771532 | 10384.5 |
| acetyl-coa carboxylase biotin carboxyl carrier protein subunit | DXC44_07385 | Not Available | Negative | 1771535 - 1772050 | 19041.9 |
| acetyl-coa carboxylase biotin carboxylase subunit | DXC44_07390 | Not Available | Negative | 1772075 - 1773586 | 57028.6 |
| duf488 family protein | DXC44_07395 | Not Available | Negative | 1773763 - 1774119 | 14248.8 |
| n-acetyltransferase | DXC44_07400 | Not Available | Negative | 1774193 - 1774678 | 18657.5 |
| gnat family n-acetyltransferase | DXC44_07405 | Not Available | Positive | 1774782 - 1775213 | 16235.8 |
| n-acetyltransferase | DXC44_07410 | Not Available | Positive | 1775231 - 1775752 | 20122.9 |
| b12-binding domain-containing radical sam protein | DXC44_07415 | Not Available | Positive | 1775768 - 1777405 | 62730.8 |
| luxr family transcriptional regulator | DXC44_07420 | Not Available | Positive | 1778264 - 1779028 | 29423.2 |
| hypothetical protein | DXC44_07425 | Not Available | Negative | 1778969 - 1779319 | 13439.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

