Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DXC44_07280 | Not Available | Positive | 1738609 - 1741911 | 121135.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_07285 | Not Available | Positive | 1741924 - 1743552 | 62488.4 |
| serine/threonine protein phosphatase | DXC44_07290 | Not Available | Positive | 1743656 - 1744714 | 40404.4 |
| hypothetical protein | DXC44_07295 | Not Available | Positive | 1744721 - 1748536 | 145054.0 |
| hypothetical protein | DXC44_07300 | Not Available | Positive | 1748517 - 1750832 | 89059.5 |
| efflux rnd transporter periplasmic adaptor subunit | DXC44_07305 | Not Available | Positive | 1751791 - 1753002 | 43709.5 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DXC44_07310 | Not Available | Positive | 1753056 - 1756274 | 116875.0 |
| tolc family protein | DXC44_07315 | Not Available | Positive | 1756286 - 1757671 | 50365.2 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | DXC44_07320 | Not Available | Positive | 1757695 - 1758462 | 27537.9 |
| tetr/acrr family transcriptional regulator | DXC44_07325 | Not Available | Positive | 1758492 - 1759145 | 25470.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

