Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoenolpyruvate synthase | DXC44_07230 | Not Available | Positive | 1724156 - 1727113 | 112937.0 |
| hypothetical protein | DXC44_07235 | Not Available | Positive | 1727223 - 1727684 | 16523.8 |
| duf4925 domain-containing protein | DXC44_07240 | Not Available | Positive | 1727768 - 1728919 | 41448.2 |
| port family protein | DXC44_07245 | Not Available | Negative | 1729792 - 1730568 | 29308.0 |
| hypothetical protein | DXC44_07250 | Not Available | Negative | 1730600 - 1731745 | 42204.5 |
| nadp-specific glutamate dehydrogenase | DXC44_07255 | Not Available | Negative | 1731971 - 1733305 | 48971.8 |
| hypothetical protein | DXC44_07260 | Not Available | Negative | 1733461 - 1733643 | 6713.74 |
| nadp-dependent malic enzyme | DXC44_07265 | Not Available | Negative | 1733772 - 1736057 | 84197.2 |
| rna polymerase sigma-70 factor | DXC44_07270 | Not Available | Positive | 1736709 - 1737317 | 23944.0 |
| fecr family protein | DXC44_07275 | Not Available | Positive | 1737376 - 1738371 | 38504.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

