Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DXC44_07180 | Not Available | Negative | 1712474 - 1713649 | 44227.0 |
| biotin/lipoyl-binding protein | DXC44_07185 | Not Available | Negative | 1713656 - 1714642 | 35945.9 |
| tolc family protein | DXC44_07190 | Not Available | Negative | 1714669 - 1716132 | 53492.8 |
| hypothetical protein | DXC44_07195 | Not Available | Negative | 1716347 - 1717219 | 33451.4 |
| malate dehydrogenase | DXC44_07200 | Not Available | Positive | 1717376 - 1718317 | 32849.0 |
| hypothetical protein | DXC44_07205 | Not Available | Negative | 1718415 - 1720199 | 65216.7 |
| chromosome partitioning protein parb | DXC44_07210 | Not Available | Negative | 1720227 - 1720739 | 19744.9 |
| duf3440 domain-containing protein | DXC44_07215 | Not Available | Negative | 1720736 - 1722037 | 52313.9 |
| hypothetical protein | DXC44_07220 | Not Available | Negative | 1722030 - 1722422 | 15101.9 |
| nadp-specific glutamate dehydrogenase | DXC44_07225 | Not Available | Negative | 1722584 - 1723921 | 48508.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

