Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radical sam protein | DXC44_07080 | Not Available | Positive | 1688844 - 1690223 | 52554.7 |
| hypothetical protein | DXC44_07085 | Not Available | Positive | 1690259 - 1692568 | 87809.4 |
| tonb-dependent receptor | DXC44_07090 | Not Available | Positive | 1692598 - 1694904 | 86965.3 |
| peptidase c39 | DXC44_07095 | Not Available | Negative | 1694923 - 1695510 | 23231.6 |
| hypothetical protein | DXC44_07100 | Not Available | Negative | 1695631 - 1696557 | 35832.6 |
| duf3244 domain-containing protein | DXC44_07105 | Not Available | Negative | 1696701 - 1697105 | 14848.9 |
| tetratricopeptide repeat protein | DXC44_07110 | Not Available | Negative | 1697264 - 1699120 | 72895.5 |
| cytidylate kinase-like family protein | DXC44_07115 | Not Available | Negative | 1699350 - 1699979 | 23564.2 |
| mate family efflux transporter | DXC44_07120 | Not Available | Negative | 1700033 - 1701403 | 49502.2 |
| serine protease | DXC44_07125 | Not Available | Positive | 1701525 - 1702898 | 49946.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

