Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4981 domain-containing protein | DXC44_06980 | Not Available | Positive | 1663509 - 1666739 | 122472.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_06985 | Not Available | Negative | 1666926 - 1668743 | 68245.8 |
| tonb-dependent receptor | DXC44_06990 | Not Available | Negative | 1668756 - 1671848 | 115052.0 |
| dtdp-glucose 4,6-dehydratase | DXC44_06995 | Not Available | Negative | 1672319 - 1673458 | 43738.0 |
| metallophosphoesterase | DXC44_07000 | Not Available | Negative | 1673507 - 1674004 | 18707.5 |
| rna degradosome polyphosphate kinase | DXC44_07005 | Not Available | Positive | 1674062 - 1676116 | 80461.5 |
| hypothetical protein | DXC44_07010 | Not Available | Positive | 1676462 - 1677085 | 23177.9 |
| peptidase c39 | DXC44_07015 | Not Available | Negative | 1677051 - 1677632 | 23420.5 |
| radical sam protein | DXC44_07020 | Not Available | Negative | 1677625 - 1679136 | 58138.2 |
| hypothetical protein | DXC44_07025 | Not Available | Negative | 1679114 - 1679317 | 7489.39 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

