Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| merr family transcriptional regulator | DXC44_06875 | Not Available | Negative | 1626804 - 1627754 | 36706.3 |
| hypothetical protein | DXC44_06885 | Not Available | Positive | 1628870 - 1629412 | 19666.0 |
| tolc family protein | DXC44_06890 | Not Available | Positive | 1629544 - 1630941 | 52018.1 |
| efflux rnd transporter periplasmic adaptor subunit | DXC44_06895 | Not Available | Positive | 1630996 - 1632126 | 41358.6 |
| multidrug efflux rnd transporter permease subunit | DXC44_06900 | Not Available | Positive | 1632131 - 1635247 | 112553.0 |
| mechanosensitive ion channel family protein | DXC44_06905 | Not Available | Positive | 1635364 - 1636557 | 45216.9 |
| sensor histidine kinase | DXC44_06910 | Not Available | Negative | 1636676 - 1638172 | 56817.7 |
| tonb-dependent receptor | DXC44_06915 | Not Available | Positive | 1638328 - 1640652 | 88521.2 |
| duf1232 domain-containing protein | DXC44_06920 | Not Available | Positive | 1640797 - 1641159 | 13990.2 |
| tonb-dependent receptor | DXC44_06925 | Not Available | Positive | 1641650 - 1644895 | 119680.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

