Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mbl fold metallo-hydrolase | DXC44_06825 | Not Available | Positive | 1615706 - 1616467 | 28736.6 |
| glycosyl hydrolase family 5 | DXC44_06830 | Not Available | Negative | 1616601 - 1617677 | 41689.3 |
| hypothetical protein | DXC44_06835 | Not Available | Negative | 1617674 - 1619704 | 77590.7 |
| hypothetical protein | DXC44_06840 | Not Available | Negative | 1619894 - 1620919 | 39493.6 |
| duf3987 domain-containing protein | DXC44_06845 | Not Available | Negative | 1621031 - 1622389 | 51873.4 |
| helix-turn-helix domain-containing protein | DXC44_06850 | Not Available | Negative | 1622427 - 1622798 | 13941.1 |
| nudix domain-containing protein | DXC44_06855 | Not Available | Positive | 1623054 - 1623680 | 23941.7 |
| had family hydrolase | DXC44_06860 | Not Available | Positive | 1623693 - 1624313 | 23095.7 |
| hypothetical protein | DXC44_06865 | Not Available | Negative | 1624441 - 1625187 | 28372.8 |
| site-specific integrase | DXC44_06870 | Not Available | Negative | 1625554 - 1626675 | 43340.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

