Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine ammonia-lyase | DXC44_06715 | Not Available | Negative | 1595163 - 1596659 | 55180.9 |
| methenyltetrahydrofolate cyclohydrolase | DXC44_06720 | Not Available | Negative | 1596694 - 1597317 | 22967.8 |
| imidazolonepropionase | DXC44_06725 | Not Available | Negative | 1597338 - 1598582 | 44889.3 |
| gxxexxy protein | DXC44_06730 | Not Available | Negative | 1598629 - 1599015 | 15179.3 |
| glutamate formimidoyltransferase | DXC44_06735 | Not Available | Negative | 1599033 - 1599935 | 33369.4 |
| formiminotransferase-cyclodeaminase | DXC44_06740 | Not Available | Negative | 1599883 - 1599996 | 4348.15 |
| urocanate hydratase | DXC44_06745 | Not Available | Negative | 1600018 - 1602015 | 74543.1 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | DXC44_06750 | Not Available | Negative | 1602541 - 1603758 | 46355.2 |
| duf2027 domain-containing protein | DXC44_06755 | Not Available | Positive | 1603823 - 1604911 | 41096.4 |
| paai family thioesterase | DXC44_06760 | Not Available | Positive | 1604939 - 1605349 | 14765.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

