Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| [fefe] hydrogenase h-cluster radical sam maturase hyde | DXC44_06665 | Not Available | Negative | 1584293 - 1585327 | 38813.7 |
| 4fe-4s dicluster domain-containing protein | DXC44_06670 | Not Available | Negative | 1585336 - 1586802 | 54223.4 |
| co-chaperone groes | DXC44_06675 | Not Available | Positive | 1587183 - 1587455 | 9740.92 |
| molecular chaperone groel | DXC44_06680 | Not Available | Positive | 1587497 - 1589134 | 58147.1 |
| Trna-thr | Not Available | Not Available | Positive | 1589382 - 1589455 | Not Available |
| mate family efflux transporter | DXC44_06690 | Not Available | Positive | 1589608 - 1590960 | 49542.5 |
| crp/fnr family transcriptional regulator | DXC44_06695 | Not Available | Positive | 1590996 - 1591580 | 22223.6 |
| carbonic anhydrase | DXC44_06700 | Not Available | Positive | 1591771 - 1592310 | 19937.5 |
| glycosyl hydrolase family 109 protein 1 | DXC44_06705 | Not Available | Negative | 1592434 - 1593849 | 53451.8 |
| nudix domain-containing protein | DXC44_06710 | Not Available | Negative | 1594544 - 1595044 | 18986.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

