Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | DXC44_06615 | Not Available | Positive | 1570153 - 1571283 | 43083.9 |
| ntpase | DXC44_06620 | Not Available | Positive | 1571300 - 1574554 | 124234.0 |
| conjugal transfer protein trag | DXC44_06625 | Not Available | Negative | 1574686 - 1576704 | 77090.4 |
| relaxase | DXC44_06630 | Not Available | Negative | 1576735 - 1577982 | 46565.8 |
| moba protein | DXC44_06635 | Not Available | Negative | 1577961 - 1578389 | 16824.5 |
| hypothetical protein | DXC44_06640 | Not Available | Negative | 1578659 - 1578838 | 6265.64 |
| is66-like element isbvu4 family transposase | DXC44_06645 | Not Available | Negative | 1579089 - 1580702 | 61921.8 |
| hypothetical protein | DXC44_06650 | Not Available | Negative | 1580771 - 1581280 | 19798.7 |
| [fefe] hydrogenase h-cluster maturation gtpase hydf | DXC44_06655 | Not Available | Negative | 1581608 - 1582798 | 43925.6 |
| [fefe] hydrogenase h-cluster radical sam maturase hydg | DXC44_06660 | Not Available | Negative | 1582862 - 1584280 | 53347.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

