Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4099 domain-containing protein | DXC44_06565 | Not Available | Positive | 1551661 - 1553232 | 59804.1 |
| type ia dna topoisomerase | DXC44_06570 | Not Available | Positive | 1553293 - 1555380 | 77608.9 |
| duf1896 domain-containing protein | DXC44_06575 | Not Available | Positive | 1555408 - 1555995 | 22268.0 |
| dna methylase | DXC44_06580 | Not Available | Positive | 1555985 - 1561801 | 219860.0 |
| gtp-binding protein | DXC44_06585 | Not Available | Positive | 1562459 - 1563128 | 24794.9 |
| tetracycline resistance ribosomal protection protein | DXC44_06590 | Not Available | Positive | 1563139 - 1564672 | 57923.6 |
| hybrid sensor histidine kinase/response regulator | DXC44_06595 | Not Available | Positive | 1564672 - 1566990 | 87108.3 |
| sigma-54-dependent fis family transcriptional regulator | DXC44_06600 | Not Available | Positive | 1566983 - 1568305 | 49763.2 |
| deaminase | DXC44_06605 | Not Available | Positive | 1568585 - 1569007 | 16091.5 |
| rtec protein | DXC44_06610 | Not Available | Positive | 1569246 - 1569851 | 23243.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

