Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rod shape-determining protein mrec | DXC44_00480 | Not Available | Positive | 166440 - 167288 | 31395.4 |
| rod shape-determining protein mred | DXC44_00485 | Not Available | Positive | 167297 - 167797 | 18942.0 |
| penicillin-binding protein 2 | DXC44_00490 | Not Available | Positive | 167797 - 169647 | 69195.5 |
| rod shape-determining protein roda | DXC44_00495 | Not Available | Positive | 169628 - 171082 | 54268.6 |
| gliding motility lipoprotein gldh | DXC44_00500 | Not Available | Negative | 171086 - 171583 | 18762.5 |
| hypothetical protein | DXC44_00505 | Not Available | Negative | 171546 - 173060 | 57801.0 |
| dna polymerase iii subunit delta | DXC44_00510 | Not Available | Negative | 173150 - 174274 | 43533.9 |
| methylenetetrahydrofolate reductase | DXC44_00515 | Not Available | Negative | 174302 - 175255 | 36181.4 |
| cardiolipin synthase | DXC44_00520 | Not Available | Negative | 175611 - 176906 | 49691.1 |
| hypothetical protein | DXC44_00525 | Not Available | Positive | 177274 - 177369 | 3271.89 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

