Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DXC44_06365 | Not Available | Negative | 1508683 - 1510233 | 58618.8 |
| tonb-dependent receptor | DXC44_06370 | Not Available | Negative | 1510249 - 1513335 | 114100.0 |
| arginine--trna ligase | DXC44_06375 | Not Available | Positive | 1513943 - 1515763 | 68029.8 |
| ribonuclease h | DXC44_06380 | Not Available | Positive | 1515764 - 1516390 | 23877.5 |
| alkaline phosphatase family protein | DXC44_06385 | Not Available | Positive | 1516406 - 1518232 | 68063.4 |
| histidinol-phosphate aminotransferase family protein | DXC44_06390 | Not Available | Positive | 1518323 - 1519372 | 40321.4 |
| phosphocholine cytidylyltransferase family protein | DXC44_06395 | Not Available | Positive | 1519369 - 1520100 | 27444.8 |
| licd family protein | DXC44_06400 | Not Available | Positive | 1520105 - 1520917 | 31895.9 |
| dolichyl-phosphate-mannose--protein mannosyltransferase | DXC44_06405 | Not Available | Positive | 1520907 - 1522604 | 64635.9 |
| glycosyltransferase | DXC44_06410 | Not Available | Negative | 1522610 - 1523560 | 35839.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

