Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna methyltransferase | DXC44_06315 | Not Available | Negative | 1496153 - 1497601 | 56232.4 |
| type ii toxin-antitoxin system hicb family antitoxin | DXC44_06320 | Not Available | Negative | 1498113 - 1498304 | 7388.35 |
| serine acetyltransferase | DXC44_06325 | Not Available | Negative | 1498455 - 1499363 | 32799.2 |
| ribonuclease r | DXC44_06330 | Not Available | Negative | 1499664 - 1501811 | 81953.4 |
| cation transporter | DXC44_06335 | Not Available | Positive | 1501942 - 1502844 | 32993.5 |
| nad(p)-dependent oxidoreductase | DXC44_06340 | Not Available | Positive | 1502855 - 1503901 | 40078.3 |
| phosphatase pap2 family protein | DXC44_06345 | Not Available | Positive | 1503892 - 1504869 | 37786.7 |
| duf2807 domain-containing protein | DXC44_06350 | Not Available | Positive | 1505046 - 1505897 | 29104.1 |
| trna dihydrouridine synthase dusb | DXC44_06355 | Not Available | Negative | 1505993 - 1506982 | 37212.5 |
| u32 family peptidase | DXC44_06360 | Not Available | Positive | 1507133 - 1508395 | 47014.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

