Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2723 domain-containing protein | DXC44_06265 | Not Available | Negative | 1480508 - 1483912 | 129136.0 |
| metal abc transporter atp-binding protein | DXC44_06270 | Not Available | Negative | 1484373 - 1485140 | 28714.7 |
| zinc abc transporter substrate-binding protein | DXC44_06275 | Not Available | Negative | 1485150 - 1486055 | 34021.5 |
| arac family transcriptional regulator | DXC44_06280 | Not Available | Positive | 1486730 - 1487227 | 19135.2 |
| hypothetical protein | DXC44_06285 | Not Available | Positive | 1487285 - 1490167 | 106060.0 |
| sam-dependent methyltransferase | DXC44_06290 | Not Available | Negative | 1490564 - 1491247 | 26029.0 |
| deda family protein | DXC44_06295 | Not Available | Negative | 1491252 - 1491719 | 17015.3 |
| hypothetical protein | DXC44_06300 | Not Available | Negative | 1491695 - 1492630 | 35926.8 |
| phosphoribosylamine--glycine ligase | DXC44_06305 | Not Available | Negative | 1492649 - 1493917 | 45584.1 |
| s9 family peptidase | DXC44_06310 | Not Available | Negative | 1493933 - 1496146 | 83651.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

