Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-aspartate oxidase | DXC44_06215 | Not Available | Negative | 1470691 - 1472271 | 58967.6 |
| orf6n domain-containing protein | DXC44_06220 | Not Available | Positive | 1472427 - 1472987 | 21509.0 |
| hypothetical protein | DXC44_06225 | Not Available | Positive | 1473063 - 1473473 | 15494.5 |
| hypothetical protein | DXC44_06230 | Not Available | Positive | 1473477 - 1473890 | 15716.4 |
| dihydrolipoyl dehydrogenase | DXC44_06235 | Not Available | Positive | 1473906 - 1475246 | 47605.6 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DXC44_06240 | Not Available | Positive | 1475246 - 1476646 | 52364.7 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DXC44_06245 | Not Available | Positive | 1476817 - 1477659 | 31850.9 |
| gluconate 5-dehydrogenase | DXC44_06250 | Not Available | Positive | 1477696 - 1478499 | 28590.5 |
| duf4861 domain-containing protein | DXC44_06255 | Not Available | Positive | 1478596 - 1479768 | 42906.5 |
| polysaccharide deacetylase family protein | DXC44_06260 | Not Available | Negative | 1479826 - 1480437 | 24627.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

