Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DXC44_06165 | Not Available | Positive | 1449501 - 1451903 | 89828.8 |
| glycoside hydrolase family 127 protein | DXC44_06170 | Not Available | Positive | 1451974 - 1454379 | 89620.9 |
| s9 family peptidase | DXC44_06175 | Not Available | Positive | 1454391 - 1456634 | 85836.0 |
| tonb-dependent receptor | DXC44_06180 | Not Available | Positive | 1457164 - 1460499 | 122693.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_06185 | Not Available | Positive | 1460512 - 1462551 | 76712.5 |
| hypothetical protein | DXC44_06190 | Not Available | Positive | 1462571 - 1464880 | 86340.0 |
| hypothetical protein | DXC44_06195 | Not Available | Negative | 1464911 - 1465165 | 10260.6 |
| pectate lyase | DXC44_06200 | Not Available | Positive | 1465149 - 1467290 | 81684.3 |
| duf1593 domain-containing protein | DXC44_06205 | Not Available | Positive | 1467307 - 1468662 | 51350.6 |
| aaa family atpase | DXC44_06210 | Not Available | Negative | 1468714 - 1470441 | 67981.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

