Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXC44_06115 | Not Available | Negative | 1429859 - 1432903 | 114150.0 |
| hypothetical protein | DXC44_06120 | Not Available | Positive | 1433095 - 1433394 | 11716.9 |
| hypothetical protein | DXC44_06125 | Not Available | Positive | 1433369 - 1433950 | 22509.9 |
| invertase | DXC44_06130 | Not Available | Negative | 1434791 - 1435402 | 23063.3 |
| glycoside hydrolase family 127 protein | DXC44_06135 | Not Available | Positive | 1435781 - 1438216 | 91078.9 |
| tonb-dependent receptor | DXC44_06140 | Not Available | Positive | 1438251 - 1441280 | 112948.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_06145 | Not Available | Positive | 1441301 - 1442980 | 63688.1 |
| duf4859 domain-containing protein | DXC44_06150 | Not Available | Positive | 1443012 - 1444022 | 36202.2 |
| duf4859 domain-containing protein | DXC44_06155 | Not Available | Positive | 1444278 - 1446542 | 84454.6 |
| glycoside hydrolase family 97 protein | DXC44_06160 | Not Available | Positive | 1446741 - 1449464 | 103344.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

