Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-hairpin-helix domain-containing protein | DXC44_06065 | Not Available | Positive | 1413882 - 1415954 | 81245.3 |
| radical sam protein | DXC44_06070 | Not Available | Positive | 1416000 - 1416776 | 29335.2 |
| hypothetical protein | DXC44_06075 | Not Available | Positive | 1416967 - 1417152 | 7162.59 |
| hypothetical protein | DXC44_06080 | Not Available | Positive | 1417309 - 1417497 | 6748.32 |
| stas domain-containing protein | DXC44_06085 | Not Available | Negative | 1417687 - 1419369 | 60720.8 |
| duf4884 domain-containing protein | DXC44_06090 | Not Available | Negative | 1419468 - 1419737 | 10182.1 |
| rubrerythrin family protein | DXC44_06095 | Not Available | Positive | 1419918 - 1420496 | 21626.4 |
| hybrid sensor histidine kinase/response regulator | DXC44_06100 | Not Available | Negative | 1420590 - 1424576 | 150472.0 |
| hypothetical protein | DXC44_06105 | Not Available | Negative | 1424717 - 1428073 | 126669.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_06110 | Not Available | Negative | 1428213 - 1429832 | 61287.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

