Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | DXC44_06015 | Not Available | Negative | 1398786 - 1399373 | 22777.2 |
| protease | DXC44_06020 | Not Available | Positive | 1399553 - 1402777 | 120771.0 |
| leucine--trna ligase | DXC44_06025 | Not Available | Positive | 1403076 - 1405910 | 108292.0 |
| yitt family protein | DXC44_06030 | Not Available | Positive | 1405992 - 1406888 | 33215.4 |
| n-acetyltransferase | DXC44_06035 | Not Available | Negative | 1406987 - 1407514 | 20733.7 |
| non-canonical purine ntp diphosphatase | DXC44_06040 | Not Available | Positive | 1407674 - 1408255 | 21352.7 |
| quinolinate synthase nada | DXC44_06045 | Not Available | Negative | 1408510 - 1409502 | 36624.0 |
| tonb-dependent receptor | DXC44_06050 | Not Available | Negative | 1409605 - 1411923 | 88581.0 |
| trmh family rna methyltransferase | DXC44_06055 | Not Available | Positive | 1412646 - 1413182 | 19947.2 |
| duf4294 domain-containing protein | DXC44_06060 | Not Available | Negative | 1413213 - 1413785 | 22062.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

