Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | DXC44_05965 | Not Available | Negative | 1380690 - 1382060 | 51936.9 |
| hypothetical protein | DXC44_05970 | Not Available | Positive | 1382398 - 1382748 | 13516.5 |
| acetyl-coa hydrolase/transferase family protein | DXC44_05975 | Not Available | Positive | 1382786 - 1384279 | 54010.7 |
| glycoside hydrolase family 3 protein | DXC44_05980 | Not Available | Positive | 1384465 - 1387059 | 96059.1 |
| abc transporter atp-binding protein | DXC44_05985 | Not Available | Negative | 1387149 - 1388741 | 59512.0 |
| arylsulfatase | DXC44_05990 | Not Available | Negative | 1388998 - 1390524 | 57741.4 |
| sulfatase | DXC44_05995 | Not Available | Negative | 1390635 - 1392056 | 53009.9 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_06000 | Not Available | Negative | 1392151 - 1394073 | 73144.0 |
| susc/raga family tonb-linked outer membrane protein | DXC44_06005 | Not Available | Negative | 1394095 - 1397622 | 131521.0 |
| fecr family protein | DXC44_06010 | Not Available | Negative | 1397687 - 1398697 | 38678.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

