Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pectate lyase | DXC44_00430 | Not Available | Positive | 147260 - 148873 | 61318.2 |
| hypothetical protein | DXC44_00435 | Not Available | Positive | 148894 - 150054 | 43442.4 |
| pectin esterase | DXC44_00440 | Not Available | Positive | 150061 - 151788 | 64143.8 |
| hybrid sensor histidine kinase/response regulator | DXC44_00445 | Not Available | Positive | 151984 - 156384 | 169267.0 |
| hypothetical protein | DXC44_00450 | Not Available | Positive | 156579 - 157313 | 27039.4 |
| s9 family peptidase | DXC44_00455 | Not Available | Positive | 157423 - 159864 | 94291.1 |
| aminoglycoside phosphotransferase | DXC44_00460 | Not Available | Negative | 159953 - 161035 | 41591.0 |
| inorganic phosphate transporter | DXC44_00465 | Not Available | Negative | 161143 - 163395 | 83827.5 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase purh | DXC44_00470 | Not Available | Positive | 163676 - 165199 | 56236.2 |
| rod shape-determining protein | DXC44_00475 | Not Available | Positive | 165312 - 166334 | 36937.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

