Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DXC44_05915 | Not Available | Positive | 1373964 - 1374629 | 25616.0 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | DXC44_05920 | Not Available | Negative | 1374797 - 1375243 | 16503.0 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | DXC44_05925 | Not Available | Negative | 1375262 - 1376317 | 40193.2 |
| trna pseudouridine(55) synthase trub | DXC44_05930 | Not Available | Negative | 1376329 - 1377036 | 26653.3 |
| undecaprenyl-diphosphatase | DXC44_05935 | Not Available | Negative | 1377041 - 1377841 | 28480.0 |
| duf3098 domain-containing protein | DXC44_05940 | Not Available | Negative | 1377879 - 1378124 | 9145.44 |
| abc transporter permease | DXC44_05945 | Not Available | Negative | 1378137 - 1379006 | 32622.6 |
| class i sam-dependent methyltransferase | DXC44_05950 | Not Available | Negative | 1379009 - 1379875 | 33272.9 |
| pspc domain-containing protein | DXC44_05955 | Not Available | Positive | 1380043 - 1380279 | 9155.18 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DXC44_05960 | Not Available | Negative | 1380289 - 1380690 | 15118.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

