Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_05860 | Not Available | Negative | 1357292 - 1359448 | 82326.3 |
| helicase | DXC44_05865 | Not Available | Negative | 1359453 - 1363535 | 157380.0 |
| hypothetical protein | DXC44_05870 | Not Available | Negative | 1363522 - 1365948 | 96296.4 |
| duf2075 domain-containing protein | DXC44_05875 | Not Available | Negative | 1365950 - 1367701 | 67134.7 |
| hypothetical protein | DXC44_05880 | Not Available | Negative | 1367728 - 1369131 | 56390.9 |
| transcriptional regulator | DXC44_05885 | Not Available | Negative | 1369124 - 1370683 | 59397.7 |
| xre family transcriptional regulator | DXC44_05890 | Not Available | Negative | 1370694 - 1370906 | 8148.97 |
| hypothetical protein | DXC44_05895 | Not Available | Negative | 1371160 - 1372410 | 48948.1 |
| hypothetical protein | DXC44_05905 | Not Available | Positive | 1373246 - 1373440 | 7276.78 |
| site-specific integrase | DXC44_05910 | Not Available | Positive | 1373638 - 1373943 | 11531.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

