Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | DXC44_05810 | Not Available | Positive | 1346320 - 1347816 | 55273.2 |
| dna-binding protein | DXC44_05815 | Not Available | Positive | 1348100 - 1348975 | 35204.5 |
| site-specific integrase | DXC44_05820 | Not Available | Positive | 1349093 - 1350208 | 43809.9 |
| hypothetical protein | DXC44_05825 | Not Available | Positive | 1350664 - 1351386 | 27592.8 |
| dna-binding protein | DXC44_05830 | Not Available | Positive | 1351480 - 1351854 | 14344.4 |
| mobilization protein | DXC44_05835 | Not Available | Positive | 1351860 - 1352930 | 40316.2 |
| metalloproteinase | DXC44_05840 | Not Available | Positive | 1353252 - 1353680 | 16234.4 |
| relaxase | DXC44_05845 | Not Available | Positive | 1353677 - 1354885 | 46048.7 |
| hypothetical protein | DXC44_05850 | Not Available | Positive | 1354920 - 1355417 | 18747.3 |
| hypothetical protein | DXC44_05855 | Not Available | Negative | 1355695 - 1356801 | 42648.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

