Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4836 family protein | DXC44_05605 | Not Available | Negative | 1304036 - 1305568 | 56188.9 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | DXC44_05610 | Not Available | Negative | 1305573 - 1306274 | 26175.7 |
| dna helicase uvrb | DXC44_05615 | Not Available | Negative | 1306303 - 1306869 | 21270.7 |
| mfs transporter | DXC44_05620 | Not Available | Negative | 1306928 - 1308205 | 46708.2 |
| duf5024 domain-containing protein | DXC44_05625 | Not Available | Negative | 1308407 - 1309021 | 22972.6 |
| hypothetical protein | DXC44_05630 | Not Available | Negative | 1309043 - 1309609 | 21072.0 |
| sigma-70 family rna polymerase sigma factor | DXC44_05635 | Not Available | Negative | 1309600 - 1310070 | 18010.0 |
| galactose mutarotase | DXC44_05640 | Not Available | Negative | 1310257 - 1311396 | 42078.6 |
| sigma-70 family rna polymerase sigma factor | DXC44_05650 | Not Available | Positive | 1312030 - 1312575 | 20808.2 |
| autotransporter outer membrane beta-barrel domain-containing protein | DXC44_05655 | Not Available | Positive | 1312572 - 1313810 | 47303.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

