Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_05550 | Not Available | Positive | 1293255 - 1293458 | 7928.88 |
| histidine kinase | DXC44_05560 | Not Available | Positive | 1294465 - 1295493 | 39005.8 |
| dna-binding response regulator | DXC44_05565 | Not Available | Positive | 1295486 - 1296259 | 29809.8 |
| hypothetical protein | DXC44_05570 | Not Available | Negative | 1296288 - 1296560 | 10521.9 |
| aldehyde dehydrogenase family protein | DXC44_05575 | Not Available | Negative | 1297076 - 1300396 | 123986.0 |
| hypothetical protein | DXC44_05580 | Not Available | Negative | 1300767 - 1301372 | 23377.8 |
| hypothetical protein | DXC44_05585 | Not Available | Positive | 1301559 - 1301744 | 7314.11 |
| yjbq family protein | DXC44_05590 | Not Available | Negative | 1301774 - 1302187 | 15533.7 |
| abc transporter permease | DXC44_05595 | Not Available | Negative | 1302196 - 1303398 | 44843.3 |
| atp-binding cassette domain-containing protein | DXC44_05600 | Not Available | Negative | 1303395 - 1304039 | 24452.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

