Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DXC44_00380 | Not Available | Positive | 125070 - 127091 | 76177.5 |
| tonb-dependent receptor | DXC44_00385 | Not Available | Positive | 127454 - 130501 | 112611.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_00390 | Not Available | Positive | 130508 - 132472 | 73508.7 |
| xylan 1,4-beta-xylosidase | DXC44_00395 | Not Available | Positive | 132781 - 134280 | 56463.8 |
| duf5060 domain-containing protein | DXC44_00400 | Not Available | Positive | 134318 - 135925 | 61913.6 |
| hypothetical protein | DXC44_00405 | Not Available | Positive | 136119 - 138665 | 95095.7 |
| glycoside hydrolase family 2 | DXC44_00410 | Not Available | Positive | 138706 - 142074 | 126710.0 |
| duf4968 domain-containing protein | DXC44_00415 | Not Available | Positive | 142088 - 144472 | 91542.3 |
| hypothetical protein | DXC44_00420 | Not Available | Positive | 144489 - 146489 | 74619.7 |
| cupin domain-containing protein | DXC44_00425 | Not Available | Negative | 146580 - 147071 | 18140.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

