Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit alpha | DXC44_04950 | Not Available | Negative | 1194818 - 1196995 | 82035.5 |
| hnh endonuclease | DXC44_04955 | Not Available | Negative | 1196992 - 1197534 | 20673.5 |
| site-specific dna-methyltransferase | DXC44_04960 | Not Available | Negative | 1197527 - 1198294 | 29245.1 |
| php domain-containing protein | DXC44_04965 | Not Available | Negative | 1198260 - 1200017 | 67981.7 |
| hypothetical protein | DXC44_04970 | Not Available | Negative | 1200014 - 1201054 | 39584.2 |
| hypothetical protein | DXC44_04975 | Not Available | Negative | 1201310 - 1201672 | 14228.4 |
| hypothetical protein | DXC44_04980 | Not Available | Negative | 1201689 - 1203044 | 51866.0 |
| hypothetical protein | DXC44_04985 | Not Available | Negative | 1203041 - 1203658 | 24303.1 |
| rna polymerase sigma factor | DXC44_04990 | Not Available | Negative | 1203636 - 1204238 | 23572.0 |
| hypothetical protein | DXC44_04995 | Not Available | Negative | 1204383 - 1204868 | 18516.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

