Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_00335 | Not Available | Positive | 107720 - 108460 | 27947.6 |
| dna helicase | DXC44_00340 | Not Available | Positive | 108482 - 111808 | 128371.0 |
| mfs transporter | DXC44_00345 | Not Available | Negative | 111862 - 113337 | 54265.1 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DXC44_00350 | Not Available | Negative | 113557 - 114513 | 35996.2 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 114748 - 115117 | Not Available |
| pts sugar transporter subunit iic | DXC44_00355 | Not Available | Negative | 114532 - 115923 | 49974.0 |
| glycoside hydrolase family 88 protein | DXC44_00360 | Not Available | Positive | 116213 - 117442 | 47081.2 |
| pectin esterase | DXC44_00365 | Not Available | Positive | 117457 - 118407 | 35815.5 |
| tonb-dependent receptor | DXC44_00370 | Not Available | Positive | 118626 - 121856 | 118593.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_00375 | Not Available | Positive | 121860 - 124013 | 80102.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

