Phocaeicola vulgatus strain TF05-18

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain TF05-18 is a Gram-positive, rod-shaped bacterium that exists as single cells and is classified as an anaerobe, indicating its growth in environments devoid of oxygen. This strain is host-associated, implying a close relationship with a specific host organism, which may suggest a specialized role within the host's microbiome. The Gram-positive nature of P. vulgatus TF05-18 is characterized by a thick peptidoglycan layer in its cell wall, a trait commonly associated with bacteria that can withstand certain environmental pressures. Its rod shape may confer advantages in motility or colonization within the host environment, although precise mechanisms remain to be elucidated. As an anaerobic organism, P. vulgatus TF05-18 likely participates in fermentative processes, contributing to the metabolic activities of the host's microbiota. This strain may play a role in the breakdown of complex polysaccharides or other organic substrates, generating short-chain fatty acids that are beneficial for host health. Understanding the specific interactions and functions of P. vulgatus TF05-18 in its host could provide insights into the broader ecological dynamics of host-associated microbial communities, particularly regarding nutrient cycling and the maintenance of gut health. Further research may illuminate its potential contributions to symbiotic relationships within the host organism.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain TF05-18
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain TF05-18

Accession NumberQSSN00000000.1

Gene Summary

Adenine Count

1462332 bp

Thymine Count

1450009 bp

Guanine Count

1075488 bp

Cytosine Count

1073971 bp

Genome Length

5062435 bp

Protein-coding Genes

4141 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+2745621 - 2745632Not Available
Site-specific recombinase for integration and excisionDXC44_11980Not Available+2745978 - 274774468251.5
hypothetical proteinDXC44_11985Not Available-2747820 - 274849426387.8
hypothetical proteinDXC44_11990Not Available-2748517 - 274900518914.2
hypothetical proteinDXC44_11995Not Available-2749701 - 275151568131.4
marr family transcriptional regulatorDXC44_12000Not Available-2752041 - 275253218496.4
Hnh endonucleaseDXC44_12005Not Available-2752522 - 275281811734.3
hypothetical proteinDXC44_12010Not Available-2752793 - 275329619520.4
hypothetical proteinDXC44_12015Not Available-2753280 - 275356411209.5
Terminase small subunitDXC44_12020Not Available+2753719 - 275409614058.0

Displaying genes 1 – 10 of 4227 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites