Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain TF05-18
Accession NumberQSSN00000000.1
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Attl | Not Available | Not Available | + | 2745621 - 2745632 | Not Available |
| Site-specific recombinase for integration and excision | DXC44_11980 | Not Available | + | 2745978 - 2747744 | 68251.5 |
| hypothetical protein | DXC44_11985 | Not Available | - | 2747820 - 2748494 | 26387.8 |
| hypothetical protein | DXC44_11990 | Not Available | - | 2748517 - 2749005 | 18914.2 |
| hypothetical protein | DXC44_11995 | Not Available | - | 2749701 - 2751515 | 68131.4 |
| marr family transcriptional regulator | DXC44_12000 | Not Available | - | 2752041 - 2752532 | 18496.4 |
| Hnh endonuclease | DXC44_12005 | Not Available | - | 2752522 - 2752818 | 11734.3 |
| hypothetical protein | DXC44_12010 | Not Available | - | 2752793 - 2753296 | 19520.4 |
| hypothetical protein | DXC44_12015 | Not Available | - | 2753280 - 2753564 | 11209.5 |
| Terminase small subunit | DXC44_12020 | Not Available | + | 2753719 - 2754096 | 14058.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
