Bacteroides sp. D20 strain TM09-11

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides sp. D20 strain TM09-11 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella. This motility feature may suggest an ability to navigate its environment, potentially aiding in its ecological interactions. The strain is notable for having a single replicon, which indicates a streamlined genetic organization that can be advantageous for its survival and adaptability in various environments. The genome of Bacteroides sp. D20 strain TM09-11 is accessible under the accession number QSOO00000000.1, providing a resource for further study of its genetic makeup and functional capabilities. Bacteroides species are commonly found in the intestines of humans and animals, playing a crucial role in the degradation of complex carbohydrates and contributing to gut health. Given the traits of strain TM09-11, it may participate in similar ecological functions, potentially influencing nutrient cycling and the overall microbial community structure within its habitat. Understanding such traits can enhance our knowledge of microbial interactions in various ecosystems and their implications for health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides sp. D20
Strainstrain TM09-11

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bacteroides sp. D20 strain TM09-11
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides sp. D20 strain TM09-11 TM09-11.Scaf55, whole genome

Gene Summary

Adenine Count

1298547 bp

Thymine Count

1325914 bp

Guanine Count

1144960 bp

Cytosine Count

1117468 bp

Genome Length

4887024 bp

Protein-coding Genes

4011 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
site-specific integraseDXD78_20630Not AvailablePositive4827040 - 482799336585.2
hypothetical proteinDXD78_20635Not AvailablePositive4828075 - 48283299853.02
xre family transcriptional regulatorDXD78_20645Not AvailablePositive4829729 - 48299327744.6
type i restriction endonuclease subunit rDXD78_20650Not AvailablePositive4829934 - 4833164125101.0
sam-dependent dna methyltransferaseDXD78_20655Not AvailablePositive4833170 - 483483162141.7
cell filamentation protein ficDXD78_20660Not AvailablePositive4834824 - 483582538827.1
hypothetical proteinDXD78_20665Not AvailablePositive4835856 - 483615811511.8
restriction endonuclease subunit sDXD78_20670Not AvailablePositive4836155 - 483662717864.6
efflux rnd transporter periplasmic adaptor subunitDXD78_20675Not AvailablePositive4836711 - 483783240535.9
acrb/acrd/acrf family proteinDXD78_20680Not AvailablePositive4837829 - 4840942112972.0

Displaying genes 4031 – 4040 of 4083 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

261 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 261 metabolites

Health Effects

No health effects information available for this bacterium.