Bacteroides sp. D20 strain TM09-11

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides sp. D20 strain TM09-11 is a Gram-negative bacterium characterized by its robust metabolic capabilities. As a member of the Bacteroides genus, this strain is known to thrive in anaerobic conditions, contributing to its ecological niche within complex microbial communities, particularly in the gastrointestinal tract of mammals. The Gram-negative cell wall structure of Bacteroides sp. D20 strain TM09-11 is typified by a thin peptidoglycan layer surrounded by an outer membrane, which plays a critical role in its interactions with the environment and host organisms. While specific metabolic pathways and ecological functions of Bacteroides sp. D20 strain TM09-11 are not detailed, members of the Bacteroides genus are typically involved in the degradation of complex carbohydrates, thus aiding in the digestion of dietary fibers and influencing host metabolism. This functional capacity suggests that Bacteroides sp. D20 strain TM09-11 could play a significant role in nutrient cycling and the maintenance of gut homeostasis. Given its Gram-negative status, this strain may also possess mechanisms for antibiotic resistance and biofilm formation, traits commonly observed in related species. Understanding the metabolic and ecological contributions of Bacteroides sp. D20 strain TM09-11 is essential for unraveling its role in microbial ecosystems and its potential implications for host health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides sp. D20
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides sp. D20 strain TM09-11

Accession NumberQSOO00000000.1

Gene Summary

Adenine Count

1298547 bp

Thymine Count

1325914 bp

Guanine Count

1144960 bp

Cytosine Count

1117468 bp

Genome Length

4887024 bp

Protein-coding Genes

4011 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative tape measure domain proteinDXD78_19435Not Available-4581393 - 4585784162886.0
Hypothetical proteinDXD78_19440Not Available-4585785 - 45859857346.62
hypothetical proteinDXD78_19445Not Available-4586024 - 458651518742.3
hypothetical proteinDXD78_19450Not Available-4586519 - 458709420567.4
hypothetical proteinDXD78_19455Not Available-4587091 - 458743812500.0
hypothetical proteinDXD78_19460Not Available-4587380 - 458785917543.8
Hypothetical proteinDXD78_19465Not Available-4587887 - 458827313660.9
N-acetylmuramoyl-l-alanine amidaseDXD78_19470Not Available-4588286 - 458875017191.3
hypothetical proteinDXD78_19475Not Available-4588750 - 458997344803.2
Capsid maturation proteaseDXD78_19480Not Available-4589985 - 459102238668.9

Displaying genes 1 – 10 of 4083 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

261 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 261 metabolites