Agathobacter rectalis strain AM29-10

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter rectalis strain AM29-10 is a Gram-positive, non-motile, rod-shaped bacterium that thrives as a chemoheterotroph. This organism is anaerobic, meaning it does not require oxygen for its growth and metabolism. Agathobacter rectalis is mesophilic, with an optimal growth temperature of 37°C, which aligns with the typical human body temperature, suggesting a niche within the human microbiome. This strain is characterized by having one replicon and a single membrane, which is typical of certain bacteria. Agathobacter rectalis is recognized as free-living, indicating its ability to exist independently rather than relying on a host organism for survival. However, it is also associated with Homo sapiens, reflecting its presence in the human gut microbiota. Notably, Agathobacter rectalis strain AM29-10 does not undergo sporulation, a trait that may affect its survival and reproduction strategies in various environments. The strain has been cataloged under the accession number QSKC00000000.1, providing a reference for further research and characterization. From an ecological perspective, Agathobacter rectalis contributes to the microbial diversity of the human gut, playing a role in the complex interactions that influence host health. Its ability to thrive in anaerobic conditions and utilize organic compounds as energy sources may be significant for maintaining gut homeostasis and potentially influencing metabolic processes within the host.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter rectalis
Strainstrain AM29-10

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Agathobacter rectalis strain AM29-10
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Agathobacter rectalis strain AM29-10 AM29-10.Scaf86, whole genome

Gene Summary

Adenine Count

948332 bp

Thymine Count

971173 bp

Guanine Count

647751 bp

Cytosine Count

675241 bp

Genome Length

3243530 bp

Protein-coding Genes

2910 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcription termination factor rhoDW753_06275Not AvailableNegative1354791 - 135613149977.2
nadp-dependent malic enzymeDW753_06280Not AvailablePositive1356403 - 135755140827.3
tigr01212 family radical sam proteinDW753_06285Not AvailablePositive1357553 - 135846134274.5
duf4364 family proteinDW753_06290Not AvailablePositive1358473 - 135898819812.3
flavin reductase family proteinDW753_06295Not AvailableNegative1358990 - 135955920901.3
4-hydroxy-tetrahydrodipicolinate synthaseDW753_06300Not AvailableNegative1359606 - 136049031471.2
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseDW753_06305Not AvailableNegative1360558 - 136203054488.5
diaminopimelate epimeraseDW753_06310Not AvailableNegative1362148 - 136300531824.9
arac family transcriptional regulatorDW753_06315Not AvailablePositive1363156 - 136399232141.3
putative manganese-dependent inorganic diphosphataseDW753_06320Not AvailableNegative1364042 - 136569161184.8

Displaying genes 1211 – 1220 of 2969 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.