Parabacteroides merdae strain AM34-17

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae strain AM34-17 is a Gram-negative, anaerobic bacterium classified within the gastrointestinal tract of Homo sapiens. This species is characterized by its rod-shaped morphology and the presence of flagella, which may contribute to its motility within the gut environment. With a single replicon, Parabacteroides merdae strain AM34-17 showcases a stable genetic structure, potentially influencing its adaptability and role in the gut microbiome. The strain has been associated with health effects, specifically OSA (obstructive sleep apnea), indicating a potential link between gut microbiota composition and sleep-related health conditions. The habitat of this strain within the gastrointestinal tract emphasizes its role in the gut microbiomes, which are essential for various metabolic processes and overall health. The presence of such bacteria is crucial as they may contribute to the maintenance of gut homeostasis and influence host immunity and metabolism. Understanding the characteristics and functions of Parabacteroides merdae strain AM34-17 can provide insights into the complex interactions within the gut microbiome and their implications for human health, particularly in relation to conditions like OSA. Further research is necessary to explore these relationships and the potential therapeutic applications of modulating gut microbiota.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
Strainstrain AM34-17

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides merdae strain AM34-17
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain AM34-17 AM34-17.Scaf82, whole genome

Gene Summary

Adenine Count

1271882 bp

Thymine Count

1316970 bp

Guanine Count

1085623 bp

Cytosine Count

1035085 bp

Genome Length

4710988 bp

Protein-coding Genes

3772 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
riboflavin biosynthesis protein ribfDW828_04590Not AvailablePositive1115041 - 111596734682.7
m20/m25/m40 family metallo-hydrolaseDW828_04595Not AvailablePositive1115977 - 111703238965.4
lipopolysaccharide biosynthesis proteinDW828_04600Not AvailablePositive1117087 - 111837647314.7
peptidase m24DW828_04605Not AvailableNegative1118433 - 111976450477.1
duf4292 domain-containing proteinDW828_04610Not AvailableNegative1119766 - 112060531392.0
tetratricopeptide repeat proteinDW828_04615Not AvailableNegative1120598 - 112236467073.4
dutp diphosphataseDW828_04620Not AvailableNegative1122404 - 112283515534.9
glycoside hydrolase family 2 proteinDW828_04625Not AvailableNegative1123318 - 112581994495.4
pglz domain-containing proteinDW828_04630Not AvailablePositive1125978 - 112752860000.1
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsaeDW828_04635Not AvailablePositive1127668 - 112808715674.4

Displaying genes 901 – 910 of 3863 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
OsaCausesPMC12415091

Displaying health effects 1 – 1 of 1 in total