Parabacteroides merdae strain AM34-17

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae strain AM34-17 is a Gram-negative, anaerobic bacterium classified within the gastrointestinal tract of Homo sapiens. This species is characterized by its rod-shaped morphology and the presence of flagella, which may contribute to its motility within the gut environment. With a single replicon, Parabacteroides merdae strain AM34-17 showcases a stable genetic structure, potentially influencing its adaptability and role in the gut microbiome. The strain has been associated with health effects, specifically OSA (obstructive sleep apnea), indicating a potential link between gut microbiota composition and sleep-related health conditions. The habitat of this strain within the gastrointestinal tract emphasizes its role in the gut microbiomes, which are essential for various metabolic processes and overall health. The presence of such bacteria is crucial as they may contribute to the maintenance of gut homeostasis and influence host immunity and metabolism. Understanding the characteristics and functions of Parabacteroides merdae strain AM34-17 can provide insights into the complex interactions within the gut microbiome and their implications for human health, particularly in relation to conditions like OSA. Further research is necessary to explore these relationships and the potential therapeutic applications of modulating gut microbiota.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
Strainstrain AM34-17

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides merdae strain AM34-17
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain AM34-17 AM34-17.Scaf82, whole genome

Gene Summary

Adenine Count

1271882 bp

Thymine Count

1316970 bp

Guanine Count

1085623 bp

Cytosine Count

1035085 bp

Genome Length

4710988 bp

Protein-coding Genes

3772 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisieDW828_09650Not AvailableNegative2317830 - 231842622298.9
imidazole glycerol phosphate synthase subunit hisfDW828_09655Not AvailableNegative2318582 - 231933726993.3
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseDW828_09660Not AvailableNegative2319356 - 232007526680.4
imidazole glycerol phosphate synthase subunit hishDW828_09665Not AvailableNegative2320082 - 232067222014.6
Trna-aspNot AvailableNot AvailablePositive2321442 - 2321515Not Available
Trna-aspNot AvailableNot AvailablePositive2321531 - 2321607Not Available
site-specific integraseDW828_09680Not AvailablePositive2321848 - 232307747525.1
hypothetical proteinDW828_09685Not AvailablePositive2323113 - 232388028899.8
dna-binding proteinDW828_09690Not AvailableNegative2324098 - 232439111544.9
duf3876 domain-containing proteinDW828_09695Not AvailableNegative2324451 - 232475311812.1

Displaying genes 1881 – 1890 of 3863 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
OsaCausesPMC12415091

Displaying health effects 1 – 1 of 1 in total