Parabacteroides merdae strain AM34-17

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae strain AM34-17 is a Gram-negative, anaerobic bacterium classified within the gastrointestinal tract of Homo sapiens. This species is characterized by its rod-shaped morphology and the presence of flagella, which may contribute to its motility within the gut environment. With a single replicon, Parabacteroides merdae strain AM34-17 showcases a stable genetic structure, potentially influencing its adaptability and role in the gut microbiome. The strain has been associated with health effects, specifically OSA (obstructive sleep apnea), indicating a potential link between gut microbiota composition and sleep-related health conditions. The habitat of this strain within the gastrointestinal tract emphasizes its role in the gut microbiomes, which are essential for various metabolic processes and overall health. The presence of such bacteria is crucial as they may contribute to the maintenance of gut homeostasis and influence host immunity and metabolism. Understanding the characteristics and functions of Parabacteroides merdae strain AM34-17 can provide insights into the complex interactions within the gut microbiome and their implications for human health, particularly in relation to conditions like OSA. Further research is necessary to explore these relationships and the potential therapeutic applications of modulating gut microbiota.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
Strainstrain AM34-17

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides merdae strain AM34-17
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain AM34-17 AM34-17.Scaf82, whole genome

Gene Summary

Adenine Count

1271882 bp

Thymine Count

1316970 bp

Guanine Count

1085623 bp

Cytosine Count

1035085 bp

Genome Length

4710988 bp

Protein-coding Genes

3772 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate dehydrogenaseDW828_00485Not AvailableNegative121873 - 12261327793.8
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieDW828_00490Not AvailableNegative122635 - 12340228330.1
phosphoribosylaminoimidazolesuccinocarboxamide synthaseDW828_00495Not AvailableNegative123414 - 12436135781.8
phoh family proteinDW828_00500Not AvailableNegative124383 - 12540538120.8
type ii toxin-antitoxin system rele/pare family toxinDW828_00505Not AvailableNegative125529 - 12584312456.2
hypothetical proteinDW828_00510Not AvailableNegative125834 - 1260769309.51
hypothetical proteinDW828_00515Not AvailablePositive126177 - 12684525694.8
thiol reductase thioredoxinDW828_00525Not AvailableNegative130415 - 13076813637.7
rna polymerase sigma-70 factorDW828_00530Not AvailablePositive130921 - 13150522875.6
fecr family proteinDW828_00535Not AvailablePositive131624 - 13264938806.7

Displaying genes 111 – 120 of 3863 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
OsaCausesPMC12415091

Displaying health effects 1 – 1 of 1 in total