Dorea formicigenerans strain AM37-5

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Dorea

Description

Dorea formicigenerans strain AM37-5 is a Gram-positive, anaerobic bacterium primarily found in the gut of Homo sapiens. This strain is characterized by the presence of flagella, which may contribute to its motility within the gut environment. It possesses a single replicon, indicating a streamlined genetic structure that aids in its adaptation to the anaerobic conditions typical of intestinal habitats. The anaerobic nature of Dorea formicigenerans suggests a specialized role in the gut microbiome, where it likely participates in various metabolic processes, including the fermentation of dietary fibers. Such activities are crucial for maintaining gut health and influencing the overall microbiota composition. The accession number for this strain is QSHK00000000.1, which provides a reference point for researchers seeking to explore its genetic and phenotypic characteristics further. Understanding the specific functions and interactions of Dorea formicigenerans AM37-5 within the human gut could shed light on its contributions to human health, particularly in relation to digestion and microbial balance.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusDorea
SpeciesDorea formicigenerans
Strainstrain AM37-5

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dorea formicigenerans strain AM37-5 AM37-5.Scaf44, whole genome

Gene Summary

Adenine Count

987371 bp

Thymine Count

1006983 bp

Guanine Count

676403 bp

Cytosine Count

696885 bp

Genome Length

3367825 bp

Protein-coding Genes

3108 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-deoxy-d-xylulose-5-phosphate reductoisomeraseDW860_13605Not AvailableNegative2770051 - 277119342162.5
phosphatidate cytidylyltransferaseDW860_13610Not AvailableNegative2771228 - 277203428907.3
isoprenyl transferaseDW860_13615Not AvailableNegative2772036 - 277274327331.6
ribosome recycling factorDW860_13620Not AvailableNegative2772937 - 277348820801.3
ump kinaseDW860_13625Not AvailableNegative2773507 - 277420224973.4
yiha family ribosome biogenesis gtp-binding proteinDW860_13630Not AvailableNegative2774359 - 277494922332.2
endopeptidase laDW860_13635Not AvailableNegative2774953 - 277729888439.4
atp-dependent clp protease atp-binding subunit clpxDW860_13640Not AvailableNegative2777362 - 277862146526.9
atp-dependent clp endopeptidase proteolytic subunit clppDW860_13645Not AvailableNegative2778660 - 277924121228.4
trigger factorDW860_13650Not AvailableNegative2779275 - 278056148087.2

Displaying genes 2601 – 2610 of 3166 in total

Metabolites

273 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 273 metabolites

Health Effects

No health effects information available for this bacterium.