Dorea formicigenerans strain AM37-5

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Dorea

Description

Dorea formicigenerans strain AM37-5 is a Gram-positive anaerobic bacterium primarily found in the gut environment. This strain is part of the diverse microbial community residing within the gastrointestinal tract, where it plays a role in the fermentation of complex carbohydrates. As an anaerobe, D. formicigenerans strain AM37-5 thrives in oxygen-depleted conditions, which are characteristic of the gut microbiome, allowing it to contribute to the metabolic processes that influence gut health and function. The anaerobic nature of D. formicigenerans strain AM37-5 suggests its adaptation to the gut environment, where oxygen levels are minimal. This adaptation may enable the strain to utilize various substrates for energy production, potentially contributing to short-chain fatty acid (SCFA) formation, which is crucial for maintaining gut homeostasis and overall health. Additionally, its presence in the gut microbiome may have implications for nutrient absorption and immune modulation. The ecological significance of Dorea formicigenerans strain AM37-5 lies in its potential role in complex microbial interactions, as well as its participation in the degradation of dietary fibers. This capability may support the symbiotic relationship between the host and its microbiota, highlighting the importance of anaerobic bacteria in the gastrointestinal ecosystem and their contribution to the metabolic health of the host.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusDorea
SpeciesDorea formicigenerans
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dorea formicigenerans strain AM37-5

Accession NumberQSHK00000000.1

Gene Summary

Adenine Count

987371 bp

Thymine Count

1006983 bp

Guanine Count

676403 bp

Cytosine Count

696885 bp

Genome Length

3367825 bp

Protein-coding Genes

3108 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycine reductaseDW860_00005Not Available+168 - 3898442.8
5s ribosomal rnaNot AvailableNot Available+257 - 374Not Available
glycine reductaseDW860_00010Not Available+401 - 193955147.6
glycine reductaseDW860_00015Not Available+1952 - 310340327.5
hypothetical proteinDW860_00020Not Available+3287 - 412931084.2
gnat family n-acetyltransferaseDW860_00025Not Available+4384 - 561646128.8
threonine/serine exporterDW860_00030Not Available+5613 - 609517584.4
nad-dependent deacetylaseDW860_00035Not Available+6134 - 687728112.9
glutamate--trna ligaseDW860_00040Not Available+6882 - 833955928.5
atp-dependent helicaseDW860_00045Not Available+8349 - 1019372846.6

Displaying genes 1 – 10 of 3166 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

273 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 273 metabolites