Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enoyl-acp reductase | DW869_05000 | Not Available | Negative | 1232768 - 1233625 | 31326.5 |
| glycoside hydrolase family 28 protein | DW869_05005 | Not Available | Positive | 1234002 - 1235621 | 59176.8 |
| duf4861 domain-containing protein | DW869_05010 | Not Available | Positive | 1235760 - 1236974 | 45671.0 |
| glycoside hydrolase | DW869_05015 | Not Available | Positive | 1236988 - 1238652 | 61567.8 |
| sigma-70 family rna polymerase sigma factor | DW869_05020 | Not Available | Positive | 1238753 - 1239337 | 23217.7 |
| duf4974 domain-containing protein | DW869_05025 | Not Available | Positive | 1239404 - 1240564 | 44078.4 |
| susc/raga family tonb-linked outer membrane protein | DW869_05030 | Not Available | Positive | 1240620 - 1243937 | 122594.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_05035 | Not Available | Positive | 1243958 - 1245448 | 55759.7 |
| thioredoxin | DW869_05040 | Not Available | Positive | 1245467 - 1246633 | 44545.2 |
| tlpa family protein disulfide reductase | DW869_05045 | Not Available | Positive | 1246635 - 1247984 | 50445.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

