Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hded family acid-resistance protein | DW869_04895 | Not Available | Positive | 1212069 - 1212632 | 20938.6 |
| translocation/assembly module tamb | DW869_04900 | Not Available | Positive | 1212697 - 1217157 | 166367.0 |
| agmatine deiminase family protein | DW869_04905 | Not Available | Positive | 1217212 - 1218237 | 39288.6 |
| acyltransferase | DW869_04910 | Not Available | Positive | 1218249 - 1219136 | 33233.4 |
| duf4251 domain-containing protein | DW869_04915 | Not Available | Positive | 1219251 - 1219841 | 21487.3 |
| methylated-dna--[protein]-cysteine s-methyltransferase | DW869_04920 | Not Available | Negative | 1219935 - 1220462 | 19599.8 |
| aspartate--trna(asp/asn) ligase | DW869_04925 | Not Available | Negative | 1220637 - 1222400 | 66472.9 |
| thioredoxin | DW869_04930 | Not Available | Negative | 1222529 - 1222825 | 11450.8 |
| duf2023 family protein | DW869_04935 | Not Available | Negative | 1223158 - 1223502 | 13416.7 |
| flavodoxin flda | DW869_04940 | Not Available | Negative | 1223519 - 1224022 | 17935.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

