Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna recombination protein rmuc | DW869_04785 | Not Available | Negative | 1186780 - 1188015 | 46960.8 |
| cof-type had-iib family hydrolase | DW869_04790 | Not Available | Positive | 1188111 - 1188917 | 30316.9 |
| ferredoxin | DW869_04795 | Not Available | Negative | 1188907 - 1189437 | 19120.2 |
| rna-binding protein | DW869_04800 | Not Available | Positive | 1189731 - 1189976 | 9169.97 |
| beta-n-acetylhexosaminidase | DW869_04805 | Not Available | Negative | 1190160 - 1192481 | 87122.3 |
| dmt family transporter | DW869_04810 | Not Available | Negative | 1192527 - 1193441 | 32976.2 |
| duf1015 domain-containing protein | DW869_04815 | Not Available | Negative | 1193678 - 1194925 | 47087.9 |
| 3-phosphoglycerate dehydrogenase | DW869_04820 | Not Available | Negative | 1195034 - 1195954 | 33087.2 |
| phosphoserine aminotransferase | DW869_04825 | Not Available | Negative | 1196062 - 1197132 | 39557.6 |
| atp-dependent helicase | DW869_04830 | Not Available | Negative | 1197387 - 1198706 | 49641.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

