Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate kinase | DW869_04730 | Not Available | Negative | 1173245 - 1174591 | 50812.7 |
| bifunctional alpha,alpha-trehalose-phosphate synthase (udp-forming)/trehalose-phosphatase | DW869_04735 | Not Available | Positive | 1174952 - 1177204 | 86563.4 |
| glycoside hydrolase family 15 protein | DW869_04740 | Not Available | Positive | 1177223 - 1179010 | 69821.9 |
| class a beta-lactamase, subclass a2 | DW869_04745 | Not Available | Positive | 1179069 - 1180028 | 36138.6 |
| n-acetyltransferase | DW869_04750 | Not Available | Positive | 1180083 - 1180538 | 17405.2 |
| class i sam-dependent methyltransferase | DW869_04755 | Not Available | Positive | 1180810 - 1181598 | 29776.4 |
| nudix hydrolase | DW869_04760 | Not Available | Negative | 1181705 - 1182259 | 21545.7 |
| duf5131 family protein | DW869_04765 | Not Available | Positive | 1182465 - 1183232 | 29840.6 |
| sensor protein kdpd | DW869_04770 | Not Available | Positive | 1183412 - 1184539 | 42638.1 |
| hamp domain-containing protein | DW869_04775 | Not Available | Positive | 1184552 - 1186021 | 55137.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

