Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease adaptor clps | DW869_00325 | Not Available | Positive | 95563 - 95871 | 12034.5 |
| aaa family atpase | DW869_00330 | Not Available | Positive | 95889 - 98117 | 83016.6 |
| leucyl/phenylalanyl-trna--protein transferase | DW869_00335 | Not Available | Positive | 98213 - 98866 | 24969.1 |
| hypothetical protein | DW869_00340 | Not Available | Positive | 99007 - 99846 | 32319.1 |
| mate family efflux transporter | DW869_00345 | Not Available | Positive | 100061 - 101353 | 48419.7 |
| phosphoglycerate mutase family protein | DW869_00350 | Not Available | Positive | 101468 - 102052 | 22907.3 |
| helix-turn-helix transcriptional regulator | DW869_00355 | Not Available | Negative | 102070 - 102840 | 29509.5 |
| alpha-galactosidase | DW869_00360 | Not Available | Negative | 102891 - 104498 | 60421.4 |
| Trna-pro | Not Available | Not Available | Positive | 104781 - 104853 | Not Available |
| Trna-phe | Not Available | Not Available | Positive | 105034 - 105109 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

